PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 600aa    MW: 63071.4 Da    PI: 10.036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29943genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-0782126244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+  Ed  l d+v++ G g+W  I r+ +   +Rt  q+  rw
         EMT29943  82 KAWSNKEDADLMDGVHKCGEGNWLNILRKYNfdSTRTYVQLSQRW 126
                      58***************************************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1076133IPR009057Homeodomain-like
PROSITE profilePS5129411.63676134IPR017930Myb domain
SuperFamilySSF466891.94E-1179132IPR009057Homeodomain-like
SMARTSM007176.2E-680132IPR001005SANT/Myb domain
CDDcd116603.16E-1582131No hitNo description
PfamPF002495.6E-682126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MILIYGPSRE QGSSHRVNSE VPLLNTPNEK IPRVPSDKQL AQSHRLTNGT GPVSNSKQAS  60
HTGLSPDPFD GNGPHKKTKK PKAWSNKEDA DLMDGVHKCG EGNWLNILRK YNFDSTRTYV  120
QLSQRWAVIC RRQGTTKLAK VKSVTTEFDI KATQKAFSMA LDMPMGKPGG FSTLRLGASQ  180
QSAQHPAPVF VAAAPELKCA TSSSSLPLPV PVSAQGQIPL PRVQPAPAQA AASKVSNTSN  240
KSQNSSKKQN AQANPTNAPS SIQAAAIAAA KHIRPRGKGS SKTSTSSKAS TMAGEPGTQP  300
GSAEHPELPN CSAPTPSPPV LITQSIEQVN VVSEVAGVNP PEQSASAHLL EPDRALSTTP  360
VSGPCDNMEM DDDSTFCAVT MEDLFPEDVK QPEMVKQPEI VKQHEMIDPK GEESIDPKDA  420
DMLEFDRFVA QGCLTTDCLD KSKGVKIAPG AQGAIPSQKK QPKQQPTVVK SIPASARAPA  480
TVKKTKTLAS HGATFPSTVT SSGLVGTGNA GVLSKAIYRK SPGPGTTGKQ NRCQEIMAQK  540
QHAMSSNSSA MARNGAPGVG TPARNAAPGV GTPARNAAPG VGIPAKNMFP GDLKLVYESP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728690.0AK372869.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3014J07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572605.10.0PREDICTED: uncharacterized protein LOC100823787
TrEMBLM8C7B00.0M8C7B0_AEGTA; Putative Telomeric repeat-binding factor 1
STRINGMLOC_66753.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-12MYB_related family protein